FastQCFastQC Report
Wed 8 May 2024
EGAF00007961921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499420
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32890.6585639341636298No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27120.5430299147010532No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21080.42208962396379807No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14920.2987465459933523No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13800.27632053181690763No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12700.254294982179328No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12240.2450842977854311No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12040.24107965239678025No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12020.24067918785791517No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8720.1746025389451764No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8130.16278883504865643No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7860.1573825637739778No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6830.136758640022426No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6680.1337551559809379No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6590.131953065556045No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6180.12374354250931079No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6120.12254214889271554No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5850.11713587761803693No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5660.11333146449881862No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5390.10792519322414No Hit

[OK]Adapter Content

Adapter graph