FastQCFastQC Report
Wed 8 May 2024
EGAF00007961925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479304
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34210.7137432610618731No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25010.5217982741642048No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23840.4973878790913491No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17730.36991137148865855No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16240.33882462904544924No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10650.2221971859195834No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10510.21927628394505363No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10250.2138517517066413No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9990.20842721946822892No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9780.20404586650643433No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9530.19882997012334552No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9220.19236225860831538No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7530.15710279905863503No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7240.151052359254252No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6750.14082920234339794No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6340.13227513227513227No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6180.12893695858995544No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6030.12580742076010215No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5490.11454108457263032No Hit
CGTCGCGGTCTGGATCTGCTGTTCTGGGAAC5230.10911655233421795No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA5010.1045265635170998No Hit
GGCAAAATCCCGGGCAACCTGATCACCAACG4900.10223156910854073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)