FastQCFastQC Report
Wed 8 May 2024
EGAF00007961929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484855
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33110.6828845737385404No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27760.572542306462757No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23990.4947871012983263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18190.37516370873766386No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15140.3122583040290396No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10580.21820956780893258No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10500.21655958998050964No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10380.21408462323787525No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10330.2130533870951109No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9470.1953161254395644No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9240.19057243918284847No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9020.1860350001546854No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7360.1517979602149096No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7020.14478555444411215No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6850.14127935155871343No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6840.14107310433016057No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6760.13942312650173763No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6520.13447319301646884No Hit
CGTCGCGGTCTGGATCTGCTGTTCTGGGAAC5860.12086087593197967No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA5810.11982963978921535No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5450.11240473956131214No Hit
GGCAAAATCCCGGGCAACCTGATCACCAACG4950.10209237813366882No Hit

[OK]Adapter Content

Adapter graph