FastQCFastQC Report
Wed 8 May 2024
EGAF00007961931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454701
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60531.3312044618331607No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31300.6883644416880543No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22780.5009885617141814No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16190.35605815689870923No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14860.3268081662455108No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9970.2192649675281119No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9910.21794541907759163No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9690.21310707475901747No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9380.20628940776466292No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8790.19331384800121398No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8660.19045482635842015No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8350.18363715936406563No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6700.14734957697475923No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6520.14339093162319855No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6390.1405319099804047No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6190.13613341514533728No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6160.13547364092007713No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5770.12689657599169563No Hit
CGTCGCGGTCTGGATCTGCTGTTCTGGGAAC5110.1123815430359731No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA4990.10974244613493261No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4880.10732327397564555No Hit
GGCAAAATCCCGGGCAACCTGATCACCAACG4620.10160523069005786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)