FastQCFastQC Report
Wed 8 May 2024
EGAF00007961933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510493
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27420.537127835249455No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23360.45759687204329935No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22100.43291484897932No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21660.42429572981412084No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18350.359456447003191No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14560.28521448873931665No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14250.27914192750929007No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13720.2687598066966638No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11750.23016965952520405No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10930.21410675562642387No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9650.18903295441857185No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9090.17806316639013658No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC8110.15886603734037488No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7980.1563194794052024No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7780.15240169796647554No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7620.14926747281549405No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6040.11831699944955172No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6030.11812111037761536No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5950.11655399780212462No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5910.11577044151437925No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5810.11381155079501579No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5530.10832665678079817No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5420.10617187698949838No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5310.1040170971981986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)