FastQCFastQC Report
Wed 8 May 2024
EGAF00007961935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475850
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62871.3212146684879689No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21770.45749711043396024No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20420.4291268256803615No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19400.4076914994220868No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16210.34065356730061996No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13680.28748555216980143No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12800.26899232951560365No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11750.2469265524850268No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11220.2357885888410213No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10500.2206577703057686No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8670.18220027319533466No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8430.1771566670169171No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC7440.1563517915309446No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7230.15193863612482925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7200.15130818535252705No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6170.12966270883681832No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5650.11873489545024692No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5430.11411158978669748No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5410.11369128927182935No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5390.11327098875696122No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5240.11011873489545024No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5200.10927813386571397No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4840.10171272459808764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)