FastQCFastQC Report
Wed 8 May 2024
EGAF00007961937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513742
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30160.5870651027169279No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23260.4527564419494611No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22570.4393255758727143No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21770.423753557233008No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18160.3534848231213333No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14530.2828267885436659No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14120.2748461289908164No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12880.2507095000992716No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11280.219565462819859No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11050.21508850746094343No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9500.18491772134651246No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9490.18472307111351613No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC8330.16214364408594198No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8140.15844528965901172No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7860.15299508313511453No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7520.14637697521323934No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6210.12087779469072024No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6190.12048849422472759No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5780.1125078346718781No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5670.11036668210891848No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5510.10725227838097723No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5360.10433252488603229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)