FastQCFastQC Report
Wed 8 May 2024
EGAF00007961939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482339
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64801.3434534632281445No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23520.48762384961614136No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20740.42998803745913144No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19840.4113289615809627No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16770.3476807805298763No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13590.281752045760347No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12920.26786140038437695No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12210.253141462747155No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10580.2193478031011384No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10580.2193478031011384No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8930.18513949732449586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8520.17663925164666344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8270.1714561750138388No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC7390.1532117452662961No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7270.1507238684825403No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6650.1378698384331352No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5780.11983273175090547No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5680.11775950109777562No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5570.1154789473793328No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5490.11382036285682892No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5320.11029587074650815No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5020.10407617878711861No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4850.10055168667679786No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4840.10034436361148487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)