FastQCFastQC Report
Wed 8 May 2024
EGAF00007961959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461751
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62131.3455303832585095No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28540.6180820398872986No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19410.4203564258658888No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16980.3677306600310557No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16050.34758993483500844No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16030.34715680095982465No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13020.2819701527446611No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11670.2527336161697538No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10960.23735736360072854No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10280.22263081184447894No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8090.17520265251185163No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7780.16848907744650257No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7310.158310431379683No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7190.1557116281285801No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6710.14531641512416865No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6600.1429341788106577No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5900.1277744931792243No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5800.12560882380330526No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5750.12452598911534571No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5430.11759584711240473No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5320.11521361079889376No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5260.11391420917334234No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5200.11261480754779091No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5080.11001600429668805No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4950.10720063410799327No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4800.10395213004411469No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4650.1007036259802361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)