FastQCFastQC Report
Wed 8 May 2024
EGAF00007961961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499624
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30660.6136614734280179No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27410.5486125566425952No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21230.42491953949369926No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19020.38068627607961186No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18750.37528221222359215No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17370.3476614414039358No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14050.2812114710262117No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12280.2457848301923046No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11720.23457640145389333No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11390.22797143451875812No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9150.18313771956511296No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG8030.1607208620882904No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7720.15451619617952703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7620.15251469104766785No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7600.152114390021296No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7410.14831153027076363No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6560.13129873664996075No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6300.12609482330712696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6260.1252942212543833No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG6220.12449361920163964No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6040.12089090996429315No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5830.11668774918738893No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5720.11448609354234385No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5660.11328519046322834No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5190.10387811634349031No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5120.1024770627511889No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5060.1012761596720734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)