FastQCFastQC Report
Wed 8 May 2024
EGAF00007961963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469877
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63341.348012352168759No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28600.6086699285132067No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19330.4113842558797302No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17480.37201225001436544No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16840.35839166420148255No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16160.34391979177529436No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13490.28709641033717337No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11480.24431925801858784No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11260.23963718164540931No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10740.22857045567244194No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8530.1815368702873305No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7740.1647239596745531No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7530.1602547049547009No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7480.15919059668806942No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7430.15812648842143795No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6550.1393981829287239No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6030.12833145695575648No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5880.12513913215586206No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5700.12130834239598874No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5660.12045705578268356No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5660.12045705578268356No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5610.11939294751605208No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5350.11385958452956838No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5340.11364676287624208No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4960.10555954004984283No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4850.10321850186325357No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4720.10045182037001174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)