FastQCFastQC Report
Wed 8 May 2024
EGAF00007961964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505614
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG24470.4839660294216537No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21870.43254340267476776No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19710.389823066608124No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18220.3603539458954855No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16600.3283136938455027No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG16340.3231714311708141No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15390.3043823944748365No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13570.26838655575201636No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG13180.26067316173998345No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11750.2323907170291962No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10410.20588828632118572No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9890.19560376097180854No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9680.19145039496532928No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9330.18452811828786386No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8380.1657390815918863No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7950.15723457024528592No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7760.1534767629060904No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7340.1451700308931319No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7120.1408188855530108No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6730.1331054915409779No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6420.12697433219807994No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6150.12163429018974949No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6130.12123873152246574No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5900.11668980684870277No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5880.11629424818141902No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5660.11194310284129791No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5570.11016308883852108No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5330.10541638483111623No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5230.10343859149469754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)