FastQCFastQC Report
Wed 8 May 2024
EGAF00007961965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505614
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28860.5707911568904342No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27190.5377620081722421No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG23420.46319919938925747No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20780.41098545530780395No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20270.4008987092920686No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19680.38922972860719834No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18030.35659613855628997No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17260.34136712986586604No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG15950.3154580371587812No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14750.2917245171217569No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13280.2626509550764022No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12690.25098197439153186No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG12220.24168634571036404No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11050.21854616367426535No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10770.21300834233229302No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10270.20311937565019958No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9800.1938237469690317No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7900.15624567357707658No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7780.15387232157337416No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7700.1522900869042392No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7540.1491256175659693No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7090.1402255475520852No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6770.1338966088755454No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6460.12776544953264743No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6240.12341430419252632No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6080.12024983485425642No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6000.11866760018512144No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5880.11629424818141902No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5800.11471201351228408No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5590.11055864750580482No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5060.10007634282278577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)