FastQCFastQC Report
Wed 8 May 2024
EGAF00007961966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472524
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG22820.48293843275685466No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20090.4251635895742862No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18140.3838958444438801No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16750.3544793491970778No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG16190.342628099313474No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15470.32739077803455485No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14270.30199524256968957No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12200.258187943892797No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12010.25416698411086No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10930.23131100219248124No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9630.20379917210554382No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9360.19808517662594916No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8730.1847525205068949No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8620.18242459642261558No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8270.1750175652453632No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8070.170784976001219No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7150.1513150654781556No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7100.15025691816711956No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6850.14496618161193928No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6590.13946381559455182No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6530.13819403882130854No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6080.12867071302198407No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5570.11787761044941632No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5480.11597294528955142No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5340.11301013281865048No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5330.11279850335644327No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5170.1094124319611279No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4980.1053914721791909No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4850.10264028917049717No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4750.10052399454842506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)