FastQCFastQC Report
Wed 8 May 2024
EGAF00007961967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472524
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61961.311256147835877No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26480.5603948159246938No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG22140.46854762932676436No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18880.3995564246472137No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18790.39765175948734877No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17870.3781818489642854No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16750.3544793491970778No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16040.33945365738036587No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG15880.3360675859850505No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13090.2770229660292387No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12270.25966935012824743No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11410.24146921637842733No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG11170.2363901092854543No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10050.21268760951824667No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9970.21099457382058898No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9250.19575725254166984No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8690.18390600265806603No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7560.15999187342865123No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7180.15194995386477722No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7100.15025691816711956No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7070.1496220297804979No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6870.14538944053635372No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6190.1309986371062634No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6170.13057537818184897No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6080.12867071302198407No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5880.12443812377783985No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5850.12380323539121821No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5680.12020553453369563No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4990.1056031016413981No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4760.10073562401063227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)