FastQCFastQC Report
Wed 8 May 2024
EGAF00007961968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510303
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG24770.4853978910568819No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21760.4264133269841643No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20210.39603921591681807No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17670.34626486616774743No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG17660.34606890416086133No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16510.3235332733689592No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15600.3057007307423237No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG14270.27963778382647175No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13240.2594536971172029No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12070.23652614231152863No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10290.20164490508580196No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9890.19380642481035776No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9560.1873396785831163No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8900.17440618612863337No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8370.16402019976366983No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8360.1638242377567837No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7950.15578979547445343No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7330.1436401510475149No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7330.1436401510475149No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7280.1426603410130844No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7030.13776129084093178No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6570.12874703852417094No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6080.11914490018675179No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5780.11326603998016865No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5750.11267815395951034No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5690.1115023819181937No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5650.11071853389064928No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5650.11071853389064928No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5260.1030760156220912No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5230.10248812960143287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)