FastQCFastQC Report
Wed 8 May 2024
EGAF00007961969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510303
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28900.5663301999008432No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28340.5553563275152213No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG24170.47364017064371555No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21410.4195546567431506No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20270.39721498795813465No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18680.36605702886324404No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17930.3513598783467861No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17490.3427375500437975No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG17420.3413658159955948No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14900.29198339026029635No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13150.25769003905522797No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12800.2508313688142143No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG12750.2498515587797838No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11140.21830167567112088No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10830.21222685345765163No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10480.20536818321663797No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9600.18812352661066073No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8330.1632363517361254No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7910.155005947446909No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7890.15461402343313677No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7870.15422209941936457No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7420.14540380910948986No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7130.1397209109097928No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6720.1316864686274625No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6580.12894300053105703No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6370.12482779838644882No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6210.12169240627627116No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6100.11953682420052401No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5300.1038598636496356No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5240.10268409160831898No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA5130.10052850953257184No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5110.10013658551879961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)