FastQCFastQC Report
Wed 8 May 2024
EGAF00007961970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479291
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG23570.49176804905579286No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19530.4074768773041847No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18220.38014483893918305No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16580.34592763060437187No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG15630.3261066867518898No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15060.31421412044040054No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14440.30127834655772795No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG13170.27478087424967296No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12320.2570463455395574No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11790.24598834528501476No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10220.21323162754986008No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9140.19069834401230149No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8930.18631687221333176No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8310.17338109833065926No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8280.1727551737879493No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7860.16399223019000983No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7530.15710706022020027No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7420.15481200356359706No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7200.15022189025039068No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7190.15001324873615401No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7170.14959596570768072No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6300.13144415396909184No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5930.12372441794233566No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5680.11850838008641931No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5590.11663060645828943No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5410.11287505920202967No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5410.11287505920202967No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5270.1099540780027165No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5160.10765902134611333No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5120.1068244552891667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)