FastQCFastQC Report
Wed 8 May 2024
EGAF00007961971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479291
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62211.2979588600662229No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27090.5652098620670949No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG22870.477163143059227No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19250.40163491490555847No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18320.3822312540815496No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17370.3624103102290675No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16240.3388338191203257No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16030.3344523473213559No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG15240.31796966769666024No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13400.279579629077116No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13210.27561544030661955No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG12030.2509957416266944No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11610.24223279802875497No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10680.22282913720474617No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10200.21281434452138678No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9350.19507981581127123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9190.19174155158348477No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8060.1681650604747429No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7760.1619058150476433No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7590.15835890930562016No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7360.15356015447817714No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7350.1533515129639405No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6550.1366601918250082No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6510.13582562576806156No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6040.12601947459893884No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5950.12414170097080897No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5870.12247256885691572No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5620.1172565310009994No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5280.11016271951695315No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA4990.10411211560409021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)