FastQCFastQC Report
Wed 8 May 2024
EGAF00007961972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476709
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG33600.7048325078821671No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG29950.6282658812818722No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG22920.48079646073390686No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11380.23872005772913873No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11300.23704188509132404No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11210.23515394087378255No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9950.20872272182820129No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9750.2045272902336646No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9710.20368820391475723No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9700.2034784323350304No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9480.19886345758104002No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8950.18774556385551774No Hit
GCAGCGCTCGTACAGGCCGTCCAGGCCCTGGGTAGTGGTTTCGC7880.16530000482474633No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7820.16404137534638533No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7650.16047525849102912No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6840.14348376053315545No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6810.14285444579397494No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6500.13635152682244303No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6230.13068769416981849No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6020.12628249099555494No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6000.12586294783610127No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5980.12544340467664758No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5810.1218772878212914No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5500.11537436884975949No Hit
GTCCGGACCAGAAGTCAGTTCTTTTACGTAGTGTGGGGACACGG5190.10887144987822761No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5050.1059346477620519No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5000.10488578986341773No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4820.1011099014283347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)