FastQCFastQC Report
Wed 8 May 2024
EGAF00007961973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476709
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG34280.719096975303592No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG32140.6742058572420492No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24680.5177162587658298No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24500.5139403703307468No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23770.4986270450106879No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG22300.46779062279084305No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12400.26011675886127594No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11650.2443838903817633No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10780.22613376294552862No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10650.22340673240907974No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10140.21270838184301116No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9950.20872272182820129No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG9310.1952973407256838No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8990.18858465017442505No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA8280.17369086801381975No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8100.1699149795787367No Hit
GAAACTCTGTATCAGAAAACCGACGCAGGTA7950.16676840588283418No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7880.16530000482474633No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7820.16404137534638533No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7240.15187462372222885No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7100.14893782160605315No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6920.14516193317097012No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6850.14369353211288227No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6830.14327398895342863No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6560.13761015630080406No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5940.12460431835774025No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5910.12397500361855975No Hit
AACCTGCCGGACAGCTTCCTGCCGTCCTTCG5400.11327665305249114No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5210.10929099303768126No Hit
AACGCCGACGGCTTCCCGGTTATCATTCCAA5160.10824213513904708No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5160.10824213513904708No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5100.10698350566068608No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5020.10530533302287139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)