FastQCFastQC Report
Wed 8 May 2024
EGAF00007961974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445531
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG31580.7088171193474753No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG27910.6264435022478796No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG21290.4778567596867558No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11230.252058779299308No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10750.24128511820726278No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10080.22624688293294967No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9280.2082907811128743No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8770.19684376620257626No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8700.19527260729331966No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8380.1880901665652895No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8360.18764126401978762No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8180.18360114111027065No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7530.16901180838145943No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7010.15734034219841042No Hit
GCAGCGCTCGTACAGGCCGTCCAGGCCCTGGGTAGTGGTTTCGC6980.1566669883801576No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6450.14477107092435768No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6370.14297546074235012No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6300.14140430183309355No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5990.13444631237781432No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5880.13197734837755398No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5820.13063064074104833No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5580.1252438101950257No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5400.12120368728550876No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5360.12030588219450498No Hit
GCGTTCGCCTTCTTCGGTCGGGGTCAGGGTCACCTCGGTGATTT4620.10369648801093526No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG4580.1027986829199315No Hit
GTCCGGACCAGAAGTCAGTTCTTTTACGTAGTGTGGGGACACGG4560.10234978037442961No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4470.10032971891967113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)