FastQCFastQC Report
Wed 8 May 2024
EGAF00007961975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445531
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58321.3089998226834945No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG31480.7065726066199658No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG29870.6704359517070642No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23240.5216247578731895No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG20780.4664097447764578No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20610.4625940731396917No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11630.2610368302093457No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10710.24038731311625902No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10000.22445127275094212No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9680.217268832022912No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9010.20223059674859886No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8840.19841492511183284No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8650.19415035092956495No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8470.19011022802004798No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8170.18337668983751973No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8120.18225443347376502No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7320.16429833165368965No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7050.1582381472894142No Hit
GAAACTCTGTATCAGAAAACCGACGCAGGTA6850.15374912183439535No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6770.15195351165238782No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6600.1481378400156218No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6330.14207765565134636No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6230.13983314292383694No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6010.13489521492331621No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5930.1330996047413087No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5770.12950838437729362No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5700.127937225468037No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4960.1113278312844673No Hit
AACGCCGACGGCTTCCCGGTTATCATTCCAA4840.108634416011456No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4760.10683880582944845No Hit
AACCTGCCGGACAGCTTCCTGCCGTCCTTCG4600.10324758546543338No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4530.1016764265561768No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4490.10077862146517301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)