FastQCFastQC Report
Wed 8 May 2024
EGAF00007961977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479213
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG34420.7182609820685165No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG31980.667344166372782No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25520.5325398100635834No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24860.5187672287688355No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23080.48162299436784894No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG22130.46179882432237856No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12940.27002606356672293No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11390.23768136507148177No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG11350.23684666317483039No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10460.21827454597433707No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG10090.2105535534303118No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10060.20992752700782327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9900.2065887194212177No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9160.1911467343331671No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8510.17758282851258209No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8450.17633077566760502No Hit
GAAACTCTGTATCAGAAAACCGACGCAGGTA7970.1663143529077884No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7760.16193216795036863No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7620.15901071131208877No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7520.15692395657046032No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7410.154628526354669No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7250.15128971876806346No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7060.14732488475896938No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7040.1469075338106437No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6840.1427340243273868No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6300.13146554872259308No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6060.12645733734268477No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5890.12290985428191638No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5200.10851124656468No Hit
AACCTGCCGGACAGCTTCCTGCCGTCCTTCG5070.10579846540056301No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5050.10538111445223733No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4990.10412906160726022No Hit
AACGCCGACGGCTTCCCGGTTATCATTCCAA4960.10350303518477169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)