FastQCFastQC Report
Wed 8 May 2024
EGAF00007961979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452303
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60981.3482112654570055No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG32080.7092590586398941No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG30900.6831703526176036No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24320.5376926529339845No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21230.46937561767222413No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG21200.4687123454852168No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12110.26774087282197995No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10200.22551254358250997No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10080.22285945483448044No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9810.216890005151414No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9670.2137947349453795No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9420.20826746672031804No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8690.19212784350313838No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8630.1908012991291236No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8460.18704275673608178No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7860.17377731299593413No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7780.17200858716391446No Hit
GAAACTCTGTATCAGAAAACCGACGCAGGTA7060.15609005467573728No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7000.1547635103017225No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6710.14835187916065115No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6610.14614097187062655No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6600.1459198811416241No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6470.1430457016645921No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6360.14061370364556502No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5780.1277904413634223No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5760.1273482599054174No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5750.12712716917641492No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5170.1143039068942722No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5140.11364063470726482No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4710.10413373336015902No Hit
AACCTGCCGGACAGCTTCCTGCCGTCCTTCG4690.10369155190215408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)