FastQCFastQC Report
Wed 8 May 2024
EGAF00007961981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478122
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26230.5486047494154211No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25270.5285261920597671No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT20450.4277151020032544No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17190.35953166764967937No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG16960.3547211799498873No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG13230.27670761855760667No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12830.2683415529927508No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC12640.2643676718494443No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9780.20455030306072508No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG9210.19262865963080553No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8070.1687853727709664No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7340.15351730311510453No Hit
GCACGCCCGGAAACCCCGTCCCCGGCAATTC7330.15330815147598312No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7300.15268069655861893No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6540.13678517198539283No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC6440.1346936555941789No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6440.1346936555941789No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6330.13239298756384354No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6330.13239298756384354No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG6210.12988316789438678No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6210.12988316789438678No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG5920.12381777035986631No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5680.11879813102095281No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG5530.11566085643413189No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5430.11356934004291791No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5050.10562157775630487No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4900.10248430316948394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)