FastQCFastQC Report
Wed 8 May 2024
EGAF00007961982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445219
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG19280.4330453102854999No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT15380.3454479705493252No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14770.33174684818033373No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT12000.26953027611130703No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11810.2652627134062113No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG11510.25852445650342865No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10310.23157142889229798No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9560.21472578663534128No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8850.19877857863208892No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT8220.18462823913624532No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7180.16126894853993204No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6520.14644478335381014No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6160.13835887507047093No Hit
GATCAGTGGGTTGAACGCCTGTTTAACTTTTTTTGGGTGTTTCT6110.1372358322533405No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG6060.13611278943621005No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT5890.13229444385796654No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5340.11994097286953162No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5230.11747027867184463No Hit
GATCAGCGGGTTGAATGCCTGTTTAACTTTCTTCGGGTGTTTCT5170.11612262729128811No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5120.11499958447415766No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5110.11477497591073156No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4630.10399376486627929No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG4600.10331993917600103No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4520.10152307066859231No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4460.10017541928803578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)