FastQCFastQC Report
Wed 8 May 2024
EGAF00007961983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445219
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60531.3595556344181179No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24580.5520878489013272No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT18750.42114105642391725No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG16200.3638658727502645No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15130.33983275646367295No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG11760.2641396705890809No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC11590.2603213250108374No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10700.24033116286591544No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8950.20102466426634982No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG8860.19900318719551502No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7060.15857364577881897No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7010.1574506029616885No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6490.14577095766353187No Hit
GCACGCCCGGAAACCCCGTCCCCGGCAATTC6430.14442330628297534No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6350.14262643777556663No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5990.13454052949222742No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5720.128476098279723No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5650.1269038383357404No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG5640.1266792297723143No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC5460.12263627563064469No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG5420.12173784137694034No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5320.11949175574267944No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5280.11859332148897508No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4830.10848593613480108No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4770.10713828475424454No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4740.10646445906396626No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4580.10287072204914884No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4570.10264611348572276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)