FastQCFastQC Report
Wed 8 May 2024
EGAF00007961985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481575
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27800.5772724913045735No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26130.5425946114312412No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT19880.4128121268753569No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18160.3770959871255775No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG16580.34428697502985No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC12910.26807870009863466No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12410.25769610133416393No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG12000.24918237034729793No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10270.21325857862222913No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG9840.20432954368478431No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8410.17463531121839798No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7890.16383740850334838No Hit
GCACGCCCGGAAACCCCGTCCCCGGCAATTC7330.15220889788714115No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7270.15096298603540467No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7000.14535638270259046No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG6630.1376732596168821No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG6440.13372787208638323No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6360.1320666562840679No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6270.13019778850646319No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC6250.12978248455588434No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG5980.12417588122307012No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5870.12189170949488658No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5760.119607537766703No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5750.1193998857914136No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5140.10673311529875928No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5110.10611015937289103No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5050.10486424752115454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)