FastQCFastQC Report
Wed 8 May 2024
EGAF00007961987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452329
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62321.377758224655063No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24290.5369985121449211No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT18150.401256607469342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16190.35792531542306594No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG15170.33537535731735085No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG12290.2717048873718024No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11930.2637460786286088No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC11770.26020883029830055No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9600.21223489981849497No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG9030.19963345264177182No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7350.1624923451735352No Hit
GCACGCCCGGAAACCCCGTCCCCGGCAATTC7180.1587340188225827No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6880.1521016782032547No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6530.1443639474807054No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6480.14325855737748408No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6030.13331004644849212No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG6000.13264681238655934No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC5780.1277830959323855No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG5650.12490908166401003No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5510.12181398937499033No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5410.11960320916854768No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5360.11849781906532635No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5330.11783458500339355No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG5130.11341302459050824No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5070.11208655646664265No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4750.10501205980602614No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4620.1021380455376507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)