FastQCFastQC Report
Wed 8 May 2024
EGAF00007961989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490561
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27680.5642519482796227No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20370.41523887956849403No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12930.26357578364362433No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12770.2603142116882508No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12180.24828716510281088No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11360.23157160883152147No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9860.20099437174989448No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9080.18509420846744848No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7860.16022472230772525No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7210.1469745862390202No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5850.11925122461834511No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5680.11578580441576074No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5220.10640878504406179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)