FastQCFastQC Report
Wed 8 May 2024
EGAF00007961991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456522
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61991.3578754145473821No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18340.4017331037715598No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11790.258256995281717No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10950.23985700579599667No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10810.23679034088170997No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10540.23087605854701415No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8670.18991417719189876No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8200.17961894497965047No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7190.1574951480980106No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6260.1371237311673917No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5610.12288564406534624No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5070.11105707939595463No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4690.10273327462860499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)