FastQCFastQC Report
Wed 8 May 2024
EGAF00007961993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493928
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27630.5593932718938792No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20690.41888696328209785No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14280.2891109635412449No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12560.25428807437521256No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12410.25125119450608185No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11850.23991350966132713No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10200.2065078311008892No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9130.18484475470109005No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7950.16095463306392835No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7700.15589316661537714No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6270.12694157852966426No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5660.1145916003951993No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5280.10689817139340146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)