FastQCFastQC Report
Wed 8 May 2024
EGAF00007961995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463206
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63041.3609495559211238No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19560.42227432287146544No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12850.2774143685530844No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11630.2510761950406515No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11400.24611080167355345No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11100.23963420162951254No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9480.2046605613916918No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8270.1785382745473936No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7460.16105145442848323No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6900.14896180101294024No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5500.1187376674740828No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5100.11010220074869498No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4960.10707978739480921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)