FastQCFastQC Report
Wed 8 May 2024
EGAF00007961996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519594
Total Bases22.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12680.24403669018502908No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10200.1963071167103546No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8960.1724423299730174No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8840.17013283448230734No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8560.16474401167065053No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7960.15319653421710028No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7150.1376074396548074No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6230.11990130755936367No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6020.11585969045062106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)