FastQCFastQC Report
Wed 8 May 2024
EGAF00007961997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519594
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31770.6114389311654869No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25580.49230745543635995No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11880.22864005358029538No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10310.1984241542435055No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9190.17686886299687835No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9040.17398199363349076No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9020.1735970777183724No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7660.14742279549032514No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6870.13221861684315062No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6210.11951639164424531No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6090.11720689615353527No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6030.11605214840818023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)