FastQCFastQC Report
Wed 8 May 2024
EGAF00007961998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480553
Total Bases21.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12750.26531933002187064No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9660.20101841004009965No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8060.16772343529225703No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7970.16585059296269092No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7950.16543440577834287No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7330.15253260306355387No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6410.13338799258354436No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5730.11923762831571127No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5660.11778097317049316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)