FastQCFastQC Report
Wed 8 May 2024
EGAF00007961999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480553
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67751.4098340869789596No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24310.5058755225750333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10890.22661392187750362No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9470.19706463178879333No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8550.17792002130878384No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8000.16647487373921296No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7940.16522631218616884No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6870.14296029782354913No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5970.12423187452788767No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5830.12131856423745144No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5810.1209023770531034No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5730.11923762831571127No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5080.10571154482440022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)