FastQCFastQC Report
Wed 8 May 2024
EGAF00007962000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524010
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12740.24312513119978627No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10130.1933169214327971No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9440.1801492337932482No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8930.17041659510314688No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8220.15686723535810385No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7940.15152382588118546No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6630.12652430297131734No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5950.11354745138451557No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5690.10858571401309136No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5460.1041964847999084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)