FastQCFastQC Report
Wed 8 May 2024
EGAF00007962001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524010
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33240.6343390393313105No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25560.4877769508215492No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11330.2162172477624473No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10690.20400374038663385No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9530.181866758267972No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9490.18110341405698363No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7810.14904295719547336No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7280.13892864639987787No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6580.12557012270758192No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6480.12366176218011106No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6360.12137172954714605No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6220.11870002480868687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)