FastQCFastQC Report
Wed 8 May 2024
EGAF00007962002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488788
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12030.24611897182418552No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9710.19865463145576404No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8300.1698077694215079No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8170.16714812965948428No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7730.15814627200340434No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7500.15344075550136255No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6270.1282764715991391No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5570.11395533441901193No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5320.1088406425689665No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5060.10352136304491927No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)