FastQCFastQC Report
Wed 8 May 2024
EGAF00007962003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488788
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG71861.4701670253770551No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24290.49694346015041285No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11040.2258647920980057No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9410.19251700123570956No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8730.17860503940358602No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8020.164079314549457No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7580.1550774568933771No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6540.13380033879718817No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6270.1282764715991391No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5960.12193425370508279No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5680.1162057988330319No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5510.11272780837500102No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5200.1063855904809447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)