FastQCFastQC Report
Wed 8 May 2024
EGAF00007962005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504655
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29580.5861430085900269No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14010.2776154006202257No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12150.24075853801111652No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8580.170017140422665No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7570.15000346771556805No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5530.10957981195073863No Hit
GATCAGGCGGAGCTGTTCCTGACTATGGACA5110.1012572945873914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)