FastQCFastQC Report
Wed 31 May 2023
EGAF00007962009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507927
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32630.642415150208593No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13780.2712988283749436No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11650.2293636684011679No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8020.1578967056289585No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7560.14884028610410552No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5540.10907079166888156No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5160.1015894016266117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)