FastQCFastQC Report
Wed 8 May 2024
EGAF00007962012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479022
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21820.4555114378880302No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12690.26491476383130624No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9490.198111986505839No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8410.17556604915849378No Hit
GTATTTCACGGAGCCCTGACCAGACGCAGTACCACCGCCGCGCG7090.1480099035117385No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6050.12629900088096163No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5860.122332585977262No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5700.11899244711098864No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5190.10834575447474229No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5180.10813699579560021No Hit
TTTTGCTTTGTCACGTGGGTCATACAGATCACGGAAGTCCAGGT4890.10208299410047973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)