FastQCFastQC Report
Wed 8 May 2024
EGAF00007962013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479022
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28040.5853593363144073No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22820.47638730580223876No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19790.4131334260221869No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13170.2749351804301264No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8170.1705558408590837No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT7670.16011790690197947No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7630.15928287218541112No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6620.1381982455920605No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6310.13172672653865583No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5630.11753113635699405No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5390.112520928057584No Hit
GAGAAACCGTACGATCCGTTCGACCGCAGCC5150.10751071975817394No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4970.10375306353361642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)