FastQCFastQC Report
Wed 8 May 2024
EGAF00007962015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444961
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62511.4048422221273327No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21130.4748730787642063No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17880.40183296963104637No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11790.26496704205537114No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7630.17147570236492637No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT7220.16226141167428157No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7200.16181193407961597No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5870.1319216740343536No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5730.12877533087169438No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4820.10832410031440959No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4780.10742514512507838No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4740.10652618993574718No Hit
GAGAAACCGTACGATCCGTTCGACCGCAGCC4720.10607671234108158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)