FastQCFastQC Report
Wed 8 May 2024
EGAF00007962016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481966
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23710.4919434150956707No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13150.2728408227966288No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9210.1910923177153575No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8160.16930654859471417No Hit
GTATTTCACGGAGCCCTGACCAGACGCAGTACCACCGCCGCGCG7110.14752077947407077No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6230.1292622301158173No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5790.12013295543669056No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5680.11785063676690886No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5590.11598328512799658No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4920.10208188959387177No Hit
TTTTGCTTTGTCACGTGGGTCATACAGATCACGGAAGTCCAGGT4840.10042202147039418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)