FastQCFastQC Report
Wed 8 May 2024
EGAF00007962017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481966
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29430.6106239859243183No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23980.4975454700124075No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19330.4010656353352726No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13430.2786503612288004No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8970.18611271334492474No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT7820.1622521090699344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7430.15416025196798117No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6590.13673163667146646No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6500.13486428503255418No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5600.11619076864343128No Hit
GAGAAACCGTACGATCCGTTCGACCGCAGCC5190.10768394451060863No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5180.10747646099517393No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5130.10643904341800044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)