FastQCFastQC Report
Wed 8 May 2024
EGAF00007962019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450938
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64751.4358958437745322No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22070.48942426675063977No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17630.3909628374632433No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12450.2760911699612807No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8330.18472605990180468No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT7310.1621065423628082No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7000.15523198311076022No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6170.1368259051133415No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5720.12684670619907837No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5110.11331934767085498No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5080.11265406774323744No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5080.11265406774323744No Hit
GAGAAACCGTACGATCCGTTCGACCGCAGCC4690.10400542868420935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)